Jonathan Gubbay

Outcomes of Preterm Infants Admitted to Canadian NICUs Before and During the SARS-COV Pandemic

Children

Campbell-Yeo, M. and Mireault, A. and Bacchini, F. and Beltempo, M. and Shah, P.S. and Alcock, L. and Comeau, J. and Dol, J. and Grant, A. and Gubbay, J. and Hughes, B. and Hundert, A. and Inglis, D. and Lalani, Y. and MacNeil, M. and Luu, T.M. and Mitra, S. and Narvey, M. and O?Brien, K. and Robeson, P. and Science, M.

Impact of COVID-19 pandemic on Legionella testing and infection rates in Ontario

BMC Public Health

Peci, A. and Zhang, P. and Sullivan, A. and Li, Y. and Bi, Y. and Murphy, A. and Leibson, K. and Gubbay, J.B. and Majury, A.

Incidence of Respiratory Syncytial Virus-Associated Hospitalization Among Adults in Ontario, Canada, 2017"2019

Journal of Infectious Diseases

Buchan, S.A. and Alessandrini, J. and Drover, S.S.M. and Andrew, M.K. and Bronskill, S.E. and Brown, K.A. and Daneman, N. and Deeks, S.L. and Gubbay, J.B. and Johnstone, J. and Karnauchow, T.M. and Lee, S. and McGeer, A.J. and McNally, J.D. and McNeil, S.A. and Mubareka, S. and Murti, M. and Smieja, M. and Wilson, S.E. and Kwong, J.C.

Comparison of six COVID-19 serology assays for detection of antibodies from patients infected with ancestral and a spectrum of SARS-CoV-2 variants

Access Microbiology

Lau, R. and Senthilkumaran, C. and Chong, J. and Qi, F. and Pulikkottil, R.-S. and Ma, J. and Ogbulafor, K. and Gabe, L. and Manguiat, K. and Robinson, A. and Wood, H. and Li, A.X. and Mozafarihashjin, M. and Campigotto, A. and McGeer, A.J. and Mubareka, S. and Gubbay, J.B. and Kus, J.V. and Bolotin, S. and Richard-Greenblatt, M. and Tran, V.

Combined oropharyngeal nasal (ON) swabs for the molecular detection of respiratory pathogens including M. pneumoniae in symptomatic children

Microbiology Spectrum

Nelson, H. and Kayda, I. and Watson, N. and Kinshella, M.-L.W. and Cochrane, J. and Desai, N. and Dittrick, M. and Hoang, L. and Hawkes, M.T. and Meckler, G. and Sabhaney, V. and Gubbay, J.B. and Imperial, M. and Srigley, J.A. and Li, L. and Goldfarb, D.M.

Disproportionate Rates of COVID-19 Among Black Canadian Communities: Lessons from a Cross-Sectional Study in the First Year of the Pandemic

Journal of Racial and Ethnic Health Disparities

Allen, U.D. and Barton, M. and Upton, J. and Bailey, A. and Campigotto, A. and Abdulnoor, M. and Julien, J.-P. and Gubbay, J. and Kissoon, N. and Litosh, A. and La Neve, M.-R. and Wong, P. and Allen, A. and Bailey, R. and Byrne, W. and Jagoowani, R. and Phillips, C. and Merreles-Pulcini, M. and Polack, A. and Prescod, C. and Siddiqi, A. and Summers, A. and Thompson, K. and Thompson, S. and James, C. and Welch, N. and Richardson, N. and Patterson, A. and Mengesha, T. and Gumb, J. and Gebremikael, L. and Collins, J. and Bailey, P. and Awuku, M. and Appelt, P.

Effectiveness of Influenza Vaccination During Pregnancy Against Laboratory-Confirmed Seasonal Influenza Among Infants Under 6 Months of Age in Ontario, Canada

Journal of Infectious Diseases

Fell, D.B. and Russell, M. and Fung, S.G. and Swayze, S. and Chung, H. and Buchan, S.A. and Roda, W. and Smolarchuk, C. and Wilson, K. and Crowcroft, N.S. and Schwartz, K.L. and Gubbay, J.B. and McGeer, A.J. and Smieja, M. and Richardson, D.C. and Katz, K. and Zahariadis, G. and Campigotto, A. and Mubareka, S. and McNally, J.D. and Karnauchow, T. and Zelyas, N. and Svenson, L.W. and Kwong, J.C.

Targeted amplification-based whole genome sequencing of Monkeypox virus in clinical specimens

Microbiology Spectrum

Isabel, S. and Eshaghi, A. and Duvvuri, V.R. and Gubbay, J.B. and Cronin, K. and Li, A. and Hasso, M. and Clark, S.T. and Hopkins, J.P. and Patel, S.N. and Braukmann, T.W.A.

Population immunity to varicella in Canada: A Canadian Immunization Research Network (CIRN) study

PLoS ONE

Wright, J. and Crowcroft, N. and McLachlan, E. and Perez-Iratxeta, C. and Joh, E. and Osman, S. and Hatchette, T. and Deeks, S.L. and Wilson, S.E. and Hughes, S.L. and Halperin, S.A. and Buchan, S.A. and Ward, B.J. and Gubbay, J. and Brisson, M. and Serhir, B. and Severini, A. and Bolotin, S.

Investigation of suspected false positive norovirus results on a syndromic gastrointestinal multiplex molecular panel

Journal of Clinical Virology

Caza, M. and Kuchinski, K. and Locher, K. and Gubbay, J. and Harms, M. and Goldfarb, D.M. and Floyd, R. and Kenmuir, E. and Kalhor, M. and Charles, M. and Prystajecky, N. and Wilmer, A.

Effectiveness of mRNA COVID-19 Monovalent and Bivalent Vaccine Booster Doses Against Omicron Severe Outcomes Among Adults Aged =50 Years in Ontario, Canada: A Canadian Immunization Research Network Study

Journal of Infectious Diseases

Grewal, R. and Buchan, S.A. and Nguyen, L. and Nasreen, S. and Austin, P.C. and Brown, K.A. and Gubbay, J. and Lee, N. and Schwartz, K.L. and Tadrous, M. and Wilson, K. and Wilson, S.E. and Kwong, J.C.

Inferring Enterovirus D68 Transmission Dynamics from the Genomic Data of Two 2022 North American outbreaks

Research Square

Grunnill, M. and Eshaghi, A. and Damodaran, L. and Nagra, S. and Gharouni, A. and Braukmann, T. and Clark, S. and Peci, A. and Isabel, S. and Banh, P. and du Plessis, L. and Murall, C.L. and Colijn, C. and Mubareka, S. and Hasso, M. and Bahl, J. and Mostafa, H.H. and Gubbay, J.B. and Patel, S.N. and Wu, J. and Duvvuri, V.R.

Effectiveness of modified vaccinia Ankara-Bavarian Nordic vaccine against mpox infection: emulation of a target trial

BMJ

Navarro, C. and Lau, C. and Buchan, S.A. and Burchell, A.N. and Nasreen, S. and Friedman, L. and Okpokoro, E. and Austin, P.C. and Tan, D.H.S. and Gubbay, J.B. and Kwong, J.C. and Mishra, S.

Correction to: Effectiveness of mRNA COVID-19 vaccine booster doses against Omicron severe outcomes (Nature Communications, (2023), 14, 1, (1273), 10.1038/s41467-023-36566-1)

Nature Communications

Grewal, R. and Nguyen, L. and Buchan, S.A. and Wilson, S.E. and Nasreen, S. and Austin, P.C. and Brown, K.A. and Fell, D.B. and Gubbay, J.B. and Schwartz, K.L. and Tadrous, M. and Wilson, K. and Kwong, J.C.

Measuring waning protection from seasonal influenza vaccination during nine influenza seasons, Ontario, Canada, 2010/11 to 2018/19

Eurosurveillance

Chung, H. and Campitelli, M.A. and Buchan, S.A. and Campigotto, A. and Crowcroft, N.S. and Gubbay, J.B. and Jung, J.K.H. and Karnauchow, T. and Katz, K. and McGeer, A.J. and McNally, J.D. and Richardson, D.C. and Richardson, S.E. and Rosella, L.C. and Russell, M.L. and Schwartz, K.L. and Simor, A. and Smieja, M. and Sundaram, M.E. and Warshawsky, B.F. and Zahariadis, G. and Kwong, J.C.

Practice recommendations regarding parental presence in NICUs during pandemics caused by respiratory pathogens like COVID-19

Frontiers in Pediatrics

Campbell-Yeo, M. and Bacchini, F. and Alcock, L. and Mitra, S. and MacNeil, M. and Mireault, A. and Beltempo, M. and Bishop, T. and Campbell, D.M. and Chilcott, A. and Comeau, J.L. and Dol, J. and Grant, A. and Gubbay, J. and Hughes, B. and Hundert, A. and Inglis, D. and Lakoff, A. and Lalani, Y. and Luu, T.M. and Morton, J. and Narvey, M. and O?Brien, K. and Robeson, P. and Science, M. and Shah, P. and Whitehead, L.

Effectiveness of one dose of MVA-BN vaccine against mpox infection in males in Ontario, Canada: A target trial emulation

medRxiv

Navarro, C. and Lau, C. and Buchan, S.A. and Burchell, A.N. and Nasreen, S. and Friedman, L. and Okpokoro, E. and Austin, P.C. and Tan, D.H.S. and Gubbay, J.B. and Kwong, J.C. and Mishra, S.

Maternal varicella antibodies in children aged less than one year: Assessment of antibody decay

PLoS ONE

Bolotin, S. and Hughes, S.L. and Savage, R.D. and McLachlan, E. and Severini, A. and Arnold, C. and Richardson, S. and Crowcroft, N.S. and Deek, S. and Halperin, S.A. and Brown, K.A. and Hatchette, T. and Osman, S. and Gubbay, J.B. and Science, M.

Maternal mRNA covid-19 vaccination during pregnancy and delta or omicron infection or hospital admission in infants: test negative design study

BMJ

Jorgensen, S.C.J. and Hernandez, A. and Fell, D.B. and Austin, P.C. and D'Souza, R. and Guttmann, A. and Brown, K.A. and Buchan, S.A. and Gubbay, J.B. and Nasreen, S. and Schwartz, K.L. and Tadrous, M. and Wilson, K. and Kwong, J.C.

Genotyping SARS-CoV-2 Variants Using Ratiometric Nucleic Acid Barcode Panels

Analytical Chemistry

Kozlowski, H.N. and Malekjahani, A. and Li, V.Y.C. and Lekuti, A.A. and Perusini, S. and Bell, N.G. and Voisin, V. and Pouyabahar, D. and Pai, S. and Bader, G.D. and Mubareka, S. and Gubbay, J.B. and Chan, W.C.W.

Effectiveness of mRNA COVID-19 vaccine booster doses against Omicron severe outcomes

Nature Communications

Grewal, R. and Nguyen, L. and Buchan, S.A. and Wilson, S.E. and Nasreen, S. and Austin, P.C. and Brown, K.A. and Fell, D.B. and Gubbay, J.B. and Schwartz, K.L. and Tadrous, M. and Wilson, K. and Kwong, J.C.

Effectiveness of mRNA COVID-19 monovalent and bivalent vaccine booster doses against Omicron severe outcomes among adults aged =50 years in Ontario, Canada

medRxiv

Grewal, R. and Buchan, S.A. and Nguyen, L. and Nasreen, S. and Austin, P.C. and Brown, K.A. and Gubbay, J. and Lee, N. and Schwartz, K.L. and Tadrous, M. and Wilson, K. and Wilson, S.E. and Kwong, J.C.

Protection conferred by COVID-19 vaccination, prior SARS-CoV-2 infection, or hybrid immunity against Omicron-associated severe outcomes among community-dwelling adults

medRxiv

Lee, N. and Nguyen, L. and Austin, P.C. and Brown, K.A. and Grewal, R. and Buchan, S.A. and Nasreen, S. and Gubbay, J. and Schwartz, K.L. and Tadrous, M. and Wilson, K. and Wilson, S.E. and Kwong, J.C.

Comparing the transmission potential from sequence and surveillance data of 2009 North American influenza pandemic waves

Infectious Disease Modelling

Duvvuri, V.R. and Hicks, J.T. and Damodaran, L. and Grunnill, M. and Braukmann, T. and Wu, J. and Gubbay, J.B. and Patel, S.N. and Bahl, J.

Burden of Severe Illness Associated With Laboratory-Confirmed Influenza in Adults Aged 50-64 Years, 2010-2011 to 2016-2017

Open Forum Infectious Diseases

Kim, P. and Coleman, B. and Kwong, J.C. and Plevneshi, A. and Hassan, K. and Green, K. and Mcneil, S.A. and Armstrong, I. and Gold, W.L. and Gubbay, J. and Katz, K. and Kuster, S.P. and Lovinsky, R. and Matukas, L. and Ostrowska, K. and Richardson, D. and Mcgeer, A.

Evaluating the Impact of Statin Use on Influenza Vaccine Effectiveness and Influenza Infection in Older Adults

Clinical Infectious Diseases

Chung, H. and Campitelli, M.A. and Buchan, S.A. and Campigotto, A. and Chen, B. and Crowcroft, N.S. and Dubey, V. and Gubbay, J.B. and Karnauchow, T. and Katz, K. and McGeer, A.J. and McNally, J.D. and Mubareka, S. and Murti, M. and Richardson, D.C. and Rosella, L.C. and Schwartz, K.L. and Smieja, M. and Zahariadis, G. and Kwong, J.C.

Environmental Testing of Surfaces in the Room of a Patient With Mpox

Clinical Infectious Diseases

Muller, M.P. and Mishra, S. and Mcgeer, A. and Patel, S. and Gubbay, J. and Hasso, M. and Chan, A.K. and Kozak, R. and Leis, J.A. and Tan, D.S.

Association Between Cycle Threshold Value and Vaccination Status Among Severe Acute Respiratory Syndrome Coronavirus 2 Omicron Variant Cases in Ontario, Canada, in December 2021

Open Forum Infectious Diseases

Ravindran, S. and Gubbay, J.B. and Cronin, K. and Sullivan, A. and Zygmunt, A. and Johnson, K. and Buchan, S.A. and Parpia, A.S.

COVID-19 Vaccine Effectiveness Against Omicron Infection and Hospitalization

Pediatrics

Pich-Renaud, P.-P. and Swayze, S. and Buchan, S.A. and Wilson, S.E. and Austin, P.C. and Morris, S.K. and Nasreen, S. and Schwartz, K.L. and Tadrous, M. and Thampi, N. and Wilson, K. and Kwong, J.C. and Chung, H. and De Serres, G. and Fell, D.B. and Fong, C. and Gubbay, J.B. and Janjua, N.Z. and Jorgensen, S.C.J. and MacDonald, S.E. and Mahmud, S.M. and Righolt, C.H. and Sundaram, M.E.

Author Correction: Effectiveness of mRNA COVID-19 vaccine booster doses against Omicron severe outcomes (Nature Communications, (2023), 14, 1, (1273), 10.1038/s41467-023-36566-1)

Nature Communications

Grewal, R. and Nguyen, L. and Buchan, S.A. and Wilson, S.E. and Nasreen, S. and Austin, P.C. and Brown, K.A. and Fell, D.B. and Gubbay, J.B. and Schwartz, K.L. and Tadrous, M. and Wilson, K. and Kwong, J.C.

Vaccine effectiveness estimates from an early-season influenza A(H3N2) epidemic, including unique genetic diversity with reassortment, Canada, 2022/23

Eurosurveillance

Skowronski, D.M. and Chuang, E.S.Y. and Sabaiduc, S. and Kaweski, S.E. and Kim, S. and Dickinson, J.A. and Olsha, R. and Gubbay, J.B. and Zelyas, N. and Charest, H. and Bastien, N. and Jassem, A.N. and De Serres, G.

Environmental Surface Contamination with Monkeypox Virus in the Ambulatory Setting in Toronto, Canada

Open Forum Infectious Diseases

Sukhdeo, S. and Muller, M. and McGeer, A. and Leis, J.A. and Chan, A. and Gubbay, J.B. and Patel, S. and Khan, S. and Perusini, S. and Li, X.A. and Kozak, R. and Mishra, S. and Tan, D.H.S. and Kandel, C.

Detection of Large Genomic RNA via DNAzyme-Mediated RNA Cleavage and Rolling Circle Amplification: SARS-CoV-2 as a Model

Chemistry - A European Journal

Gu, J. and Mathai, A. and Nurmi, C. and White, D. and Panesar, G. and Yamamura, D. and Balion, C. and Gubbay, J. and Mossman, K. and Capretta, A. and Salena, B.J. and Soleymani, L. and Filipe, C.D.M. and Brennan, J.D. and Li, Y.

Geographic clustering of travel-acquired infections in Ontario, Canada, 2008-2020

PLOS Global Public Health

Harish, V. and Buajitti, E. and Burrows, H. and Posen, J. and Bogoch, I.I. and Corbeil, A. and Gubbay, J.B. and Rosella, L.C. and Morris, S.K.

Estimating the Incidence of First RSV Hospitalization in Children Born in Ontario, Canada

Journal of the Pediatric Infectious Diseases Society

Buchan, S.A. and Chung, H. and To, T. and Daneman, N. and Guttmann, A. and Kwong, J.C. and Murti, M. and Aryal, G. and Campigotto, A. and Chakraborty, P. and Gubbay, J. and Karnauchow, T. and Katz, K. and Mcgeer, A.J. and Dayre Mcnally, J. and Mubareka, S. and Richardson, D. and Richardson, S.E. and Smieja, M. and Zahariadis, G. and Deeks, S.L.

Impact of coronavirus disease 2019 (COVID-19) pre-test probability on positive predictive value of high cycle threshold severe acute respiratory coronavirus virus 2 (SARS-CoV-2) real-time reverse transcription polymerase chain reaction (RT-PCR) test results

Infection Control & Hospital Epidemiology

Jonathan B. Gubbay and Heather Rilkoff and Heather L. Kristjanson and Jessica D. Forbes and Michelle Murti and AliReza Eshaghi and George Broukhanski and Antoine Corbeil and Nahuel Fittipaldi and Jessica P. Hopkins and Erik Kristjanson and Julianne V. Kus and Liane Macdonald and Anna Majury and Gustavo V Mallo and Tony Mazzulli and Roberto G. Melano and Romy Olsha and Stephen J. Perusini and Vanessa Tran and Vanessa G. Allen and Samir N. Patel

09 / 2022

Effect of maternal vitamin D supplementation on nasal pneumococcal acquisition, carriage dynamics and carriage density in infants in Dhaka, Bangladesh

BMC Infectious Diseases

Taghivand, M. and Pell, L.G. and Rahman, M.Z. and Mahmud, A.A. and Ohuma, E.O. and Pullangyeum, E.M. and Ahmed, T. and Hamer, D.H. and Zlotkin, S.H. and Gubbay, J.B. and Morris, S.K. and Roth, D.E.

Emergence of a mutation in the nucleocapsid gene of SARS-CoV-2 interferes with PCR detection in Canada

Scientific Reports

Isabel, S. and Abdulnoor, M. and Boissinot, K. and Isabel, M.R. and de Borja, R. and Zuzarte, P.C. and Sjaarda, C.P. and R. Barker, K. and Sheth, P.M. and Matukas, L.M. and Gubbay, J.B. and McGeer, A.J. and Mubareka, S. and Simpson, J.T. and Fattouh, R.

Effectiveness of COVID-19 vaccines against Omicron or Delta symptomatic infection and severe outcomes

medRxiv

Buchan, S.A. and Chung, H. and Brown, K.A. and Austin, P.C. and Fell, D.B. and Gubbay, J.B. and Nasreen, S. and Schwartz, K.L. and Sundaram, M.E. and Tadrous, M. and Wilson, K. and Wilson, S.E. and Kwong, J.C.

Effectiveness of COVID-19 Vaccines Over Time Prior to Omicron Emergence in Ontario, Canada: Test-Negative Design Study

Open Forum Infectious Diseases

Chung, H. and Austin, P.C. and Brown, K.A. and Buchan, S.A. and Fell, D.B. and Fong, C. and Gubbay, J.B. and Nasreen, S. and Schwartz, K.L. and Sundaram, M.E. and Tadrous, M. and Wilson, K. and Wilson, S.E. and Kwong, J.C.

Author Correction: Emergence of a mutation in the nucleocapsid gene of SARS-CoV-2 interferes with PCR detection in Canada (Scientific Reports, (2022), 12, 1, (10867), 10.1038/s41598-022-13995-4)

Scientific Reports

Isabel, S. and Abdulnoor, M. and Boissinot, K. and Isabel, M.R. and de Borja, R. and Zuzarte, P.C. and Sjaarda, C.P. and Barker, K.R. and Sheth, P.M. and Matukas, L.M. and Gubbay, J.B. and McGeer, A.J. and Mubareka, S. and Simpson, J.T. and Fattouh, R.

Adverse Outcomes Associated with Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Variant B.1.351 Infection in Vaccinated Residents of a Long-Term Care Home, Ontario, Canada

Clinical Infectious Diseases

Vanker, A. and McGeer, A.J. and O'Byrne, G. and Snyder, E.C.R. and Salisbury, D.A. and Guthrie, J.L. and Patel, S.N. and Gubbay, J.B. and Morgan, M.

Estimated Effectiveness of COVID-19 Vaccines Against Omicron or Delta Symptomatic Infection and Severe Outcomes

JAMA Network Open

Buchan, S.A. and Chung, H. and Brown, K.A. and Austin, P.C. and Fell, D.B. and Gubbay, J.B. and Nasreen, S. and Schwartz, K.L. and Sundaram, M.E. and Tadrous, M. and Wilson, K. and Wilson, S.E. and Kwong, J.C.

Population immunity to measles in Canada using Canadian Health Measures survey data " A Canadian Immunization Research Network (CIRN) study

Vaccine

Osman, S. and Crowcroft, N. and McLachlan, E. and Hatchette, T. and Perez-Iratxeta, C. and Joh, E. and Wright, J. and Halperin, S.A. and Deeks, S. and Wilson, S. and Buchan, S. and Ward, B. and Gubbay, J. and Brisson, M. and Serhir, B. and Severini, A. and Bolotin, S.

Influenza Vaccine Effectiveness by A(H3N2) Phylogenetic Subcluster and Prior Vaccination History: 2016-2017 and 2017-2018 Epidemics in Canada

Journal of Infectious Diseases

Skowronski, D.M. and Leir, S. and Sabaiduc, S. and Chambers, C. and Zou, M. and Rose, C. and Olsha, R. and Dickinson, J.A. and Winter, A.-L. and Jassem, A. and Gubbay, J.B. and Drews, S.J. and Charest, H. and Chan, T. and Hickman, R. and Bastien, N. and Li, Y. and Krajden, M. and De Serres, G.

A Prolonged Outbreak of Human Adenovirus A31 (HAdV-A31) Infection on a Pediatric Hematopoietic Stem Cell Transplantation Ward with Whole Genome Sequencing Evidence of International Linkages

Journal of Clinical Microbiology

Fattouh, R. and Stapleton, P.J. and Eshaghi, A. and Thomas, A.D. and Science, M.E. and Schechter, T. and Streitenberger, L. and Hubacek, P. and Yau, Y.C.W. and Brown, M. and Graham, M.R. and Gubbay, J.B. and Campigotto, A.J. and Patel, S.N. and Richardson, S.E.

Real-Time RT-PCR Allelic Discrimination Assay for Detection of N501Y Mutation in the Spike Protein of SARS-CoV-2 Associated with B.1.1.7 Variant of Concern

Microbiology Spectrum

Abdulnoor, M. and Eshaghi, A. and Perusini, S.J. and Broukhanski, G. and Corbeil, A. and Cronin, K. and Fittipaldi, N. and Forbes, J.D. and Guthrie, J.L. and Kus, J.V. and Li, Y. and Majury, A. and Mallo, G.V. and Mazzulli, T. and Melano, R.G. and Olsha, R. and Sullivan, A. and Tran, V. and Patel, S.N. and Allen, V.G. and Gubbay, J.B.

Effectiveness of COVID-19 vaccines against symptomatic SARS-CoV-2 infection and severe outcomes with variants of concern in Ontario

Nature Microbiology

Nasreen, S. and Chung, H. and He, S. and Brown, K.A. and Gubbay, J.B. and Buchan, S.A. and Fell, D.B. and Austin, P.C. and Schwartz, K.L. and Sundaram, M.E. and Calzavara, A. and Chen, B. and Tadrous, M. and Wilson, K. and Wilson, S.E. and Kwong, J.C.

Three on Three: Universal and High-Affinity Molecular Recognition of the Symmetric Homotrimeric Spike Protein of SARS-CoV-2 with a Symmetric Homotrimeric Aptamer

Journal of the American Chemical Society

Li, J. and Zhang, Z. and Gu, J. and Amini, R. and Mansfield, A.G. and Xia, J. and White, D. and Stacey, H.D. and Ang, J.C. and Panesar, G. and Capretta, A. and Filipe, C.D.M. and Mossman, K. and Salena, B.J. and Gubbay, J.B. and Balion, C. and Soleymani, L. and Miller, M.S. and Yamamura, D. and Brennan, J.D. and Li, Y.

Monkeypox Virus Detection in Different Clinical Specimen Types

Emerging Infectious Diseases

Hasso, M. and Perusini, S. and Eshaghi, A. and Tang, E. and Olsha, R. and Zhang, H. and Lau, E. and Sullivan, A. and Cronin, K. and Lee, S. and Obando, J. and DeLima, C. and Nagra, S. and Braukmann, T. and Duvvuri, V.R. and Richard-Greenblatt, M. and Corbeil, A. and Kus, J.V. and Majury, A. and Patel, S. and Gubbay, J.B.

Influenza vaccine effectiveness against A(H3N2) during the delayed 2021/22 epidemic in Canada

Eurosurveillance

Kim, S. and Chuang, E.S.Y. and Sabaiduc, S. and Olsha, R. and Kaweski, S.E. and Zelyas, N. and Gubbay, J.B. and Jassem, A.N. and Charest, H. and De Serres, G. and Dickinson, J.A. and Skowronski, D.M.

Impact of COVID-19 pre-test probability on positive predictive value of high cycle threshold SARS-CoV-2 real-time reverse transcription PCR test results

Jonathan B. Gubbay and Heather Rilkoff and Heather L. Kristjanson and Jessica D. Forbes and Michelle Murti and AliReza Eshaghi and George Broukhanski and Antoine Corbeil and Nahuel Fittipaldi and Jessica P. Hopkins and Erik Kristjanson and Julianne V. Kus and Liane Macdonald and Anna Majury and Gustavo V Mallo and Tony Mazzulli and Roberto G. Melano and Romy Olsha and Stephen J. Perusini and Vanessa Tran and Vanessa G Allen and Samir N Patel

03 / 2021

Prevalence of Co-Infections with Respiratory Viruses in Individuals Investigated for SARS-CoV-2 in Ontario, Canada

Viruses

Adriana Peci and Vanessa Tran and Jennifer L. Guthrie and Ye Li and Paul Nelson and Kevin L. Schwartz and AliReza Eshaghi and Sarah A. Buchan and Jonathan Gubbay

01 / 2021

Real-time RT-PCR allelic discrimination assay for detection of N501Y mutation in the spike protein of SARS-CoV-2 associated with variants of concern

medRxiv

Abdulnoor, M. and Eshaghi, A. and Perusini, S.J. and Corbeil, A. and Cronin, K. and Fittipaldi, N. and Forbes, J.D. and Guthrie, J.L. and Kus, J.V. and Majury, A. and Mazzulli, T. and Melano, R.G. and Olsha, R. and Sullivan, A. and Tran, V. and Patel, S.N. and Allen, V.G. and Gubbay, J.B.

Investigation of a severe SARS-CoV-2 outbreak in a long-term care home early in the pandemic

CMAJ

Murti, M. and Goetz, M. and Saunders, A. and Sunil, V. and Guthrie, J.L. and Eshaghi, A. and Zittermann, S. and Teatero, S. and Fittipaldi, N. and Rilkoff, H. and Gubbay, J.B. and Garber, G. and Callery, S. and Holt, A.M. and Noseworthy, A.L.

Effectiveness of BNT162b2 and mRNA-1273 covid-19 vaccines against symptomatic SARS-CoV-2 infection and severe covid-19 outcomes in Ontario, Canada: Test negative design study

The BMJ

Chung, H. and He, S. and Nasreen, S. and Sundaram, M.E. and Buchan, S.A. and Wilson, S.E. and Chen, B. and Calzavara, A. and Fell, D.B. and Austin, P.C. and Wilson, K. and Schwartz, K.L. and Brown, K.A. and Gubbay, J.B. and Basta, N.E. and Mahmud, S.M. and Righolt, C.H. and Svenson, L.W. and MacDonald, S.E. and Janjua, N.Z. and Tadrous, M. and Kwong, J.C.

Duration of SARS-CoV-2 shedding: A population-based, Canadian study

PLoS ONE

Phillips, S.P. and Wei, X. and Kwong, J.C. and Gubbay, J. and Schwartz, K.L. and Majury, A. and Groome, P.A.

Characteristics of SARS-CoV-2 testing for rapid diagnosis of COVID-19 during the initial stages of a global pandemic

PLoS ONE

Guthrie, J.L. and Chen, A.J. and Budhram, D.R. and Cronin, K. and Peci, A. and Nelson, P. and Mallo, G.V. and Broukhanski, G. and Murti, M. and Majury, A. and Mazzulli, T. and Allen, V.G. and Patel, S.N. and Kus, J.V. and Tran, V. and Gubbay, J.B.

The impact of the COVID-19 pandemic on influenza, respiratory syncytial virus, and other seasonal respiratory virus circulation in Canada: A population-based study

The Lancet Regional Health - Americas

Groves, H.E. and Pich-Renaud, P.-P. and Peci, A. and Farrar, D.S. and Buckrell, S. and Bancej, C. and Sevenhuysen, C. and Campigotto, A. and Gubbay, J.B. and Morris, S.K.

Surveilling and Tracking COVID-19 Patients Using a Portable Quantum Dot Smartphone Device

Nano Letters

Zhang, Y. and Malekjahani, A. and Udugama, B.N. and Kadhiresan, P. and Chen, H. and Osborne, M. and Franz, M. and Kucera, M. and Plenderleith, S. and Yip, L. and Bader, G.D. and Tran, V. and Gubbay, J.B. and McGeer, A. and Mubareka, S. and Chan, W.C.W.

Influenza Vaccine Effectiveness against All-Cause Mortality following Laboratory-Confirmed Influenza in Older Adults, 2010-2011 to 2015-2016 Seasons in Ontario, Canada

Clinical Infectious Diseases

Chung, H. and Buchan, S.A. and Campigotto, A. and Campitelli, M.A. and Crowcroft, N.S. and Dubey, V. and Gubbay, J.B. and Karnauchow, T. and Katz, K. and Mcgeer, A.J. and Mcnally, J.D. and Mubareka, S. and Murti, M. and Richardson, D.C. and Rosella, L.C. and Schwartz, K.L. and Smieja, M. and Zahariadis, G. and Kwong, J.C.

The impact of the COVID-19 pandemic on influenza, respiratory syncytial virus, and other seasonal respiratory virus circulation in Canada

medRxiv

Groves, H.E. and Pich-Renaud, P. and Peci, A. and Farrar, D.S. and Buckrell, S. and Bancej, C. and Sevenhuysen, C. and Campigotto, A. and Gubbay, J.B. and Morris, S.K.

Effects of Maternal Vitamin D Supplementation during Pregnancy and Lactation on Infant Acute Respiratory Infections: Follow-up of a Randomized Trial in Bangladesh

Journal of the Pediatric Infectious Diseases Society

Morris, S.K. and Pell, L.G. and Rahman, M.Z. and Mahmud, A.A. and Shi, J. and Ahmed, T. and Dimitris, M.C. and Gubbay, J.B. and Islam, M.M. and Kashem, T. and Keya, F.K. and Mohsin, M. and Pullenayegum, E. and Science, M. and Shanta, S.S. and Sumiya, M.K. and Zlotkin, S. and Roth, D.E.

Effectiveness of mRNA and ChAdOx1 COVID-19 vaccines against symptomatic SARSCoV-2 infection and severe outcomes with variants of concern in Ontario

medRxiv

Nasreen, S. and Chung, H. and He, S. and Brown, K.A. and Gubbay, J.B. and Buchan, S.A. and Fell, D.B. and Austin, P.C. and Schwartz, K.L. and Sundaram, M.E. and Calzavara, A. and Chen, B. and Tadrous, M. and Wilson, K. and Wilson, S.E. and Kwong, J.C.

Effectiveness of BNT162b2 and mRNA-1273 COVID-19 Vaccines against Symptomatic SARS-CoV-2 Infection and Severe COVID-19 Outcomes in Ontario, Canada

SSRN

Chung, H. and He, S. and Nasreen, S. and Sundaram, M.E. and Buchan, S.A. and Wilson, S.E. and Chen, B. and Calzavara, A. and Fell, D.B. and Austin, P.C. and Wilson, K. and Schwartz, K.L. and Brown, K.A. and Gubbay, J.B. and Basta, N.E. and Mahmud, S.M. and Righolt, C.H. and Svenson, L.W. and MacDonald, S.E. and Janjua, N.Z. and Tadrous, M. and Kwong, J.C.

One swab, two tests: Validation of dual SARS-CoV-2 testing on the Abbott ID NOW

Journal of Clinical Virology

Burnes, L.E. and Clark, S.T. and Sheldrake, E. and Faheem, A. and Poon, B.P. and Christie-Holmes, N. and Finlay, L. and Kandel, C. and Phan, M. and Frankland, C. and Lau, T. and Gubbay, J.B. and Corbeil, A. and Katz, K. and Kozak, R.A.

Investigation of a severe SARS-CoV-2 outbreak in a long-term care home early in the pandemic,Enqute sur une closion importante de SRAS-CoV-2 dans un tablissement de soins de longue dure au dbut de la pandmie

CMAJ

Murti, M. and Goetz, M. and Saunders, A. and Sunil, V. and Guthrie, J.L. and Eshaghi, A.R. and Zittermann, S. and Teatero, S. and Fittipaldi, N. and Rilkoff, H. and Gubbay, J.B. and Garber, G. and Callery, S. and Holt, A.M. and Noseworthy, A.L.

Evaluation of commercial SARS-CoV-2 serological assays in Canadian public health laboratories

Diagnostic Microbiology and Infectious Disease

Stein, D.R. and Osiowy, C. and Gretchen, A. and Thorlacius, L. and Fudge, D. and Lang, A. and Sekirov, I. and Morshed, M. and Levett, P.N. and Tran, V. and Kus, J.V. and Gubbay, J. and Mohan, V. and Charlton, C. and Kanji, J.N. and Tipples, G. and Serhir, B. and Therrien, C. and Roger, M. and Jiao, L. and Zahariadis, G. and Needle, R. and Gilbert, L. and Desnoyers, G. and Garceau, R. and Bouhtiauy, I. and Longtin, J. and El-Gabalawy, N. and Dibernardo, A. and Lindsay, L.R. and Drebot, M.

Effectiveness of BNT162b2 and mRNA-1273 COVID-19 vaccines against symptomatic SARS-CoV-2 infection and severe COVID-19 outcomes in Ontario, Canada: A test-negative design study

medRxiv

Chung, H. and He, S. and Nasreen, S. and Sundaram, M.E. and Buchan, S.A. and Wilson, S.E. and Chen, B. and Calzavara, A. and Fell, D.B. and Austin, P.C. and Wilson, K. and Schwartz, K.L. and Brown, K.A. and Gubbay, J.B. and Basta, N.E. and Mahmud, S.M. and Righolt, C.H. and Svenson, L.W. and MacDonald, S.E. and Janjua, N.Z. and Tadrous, M. and Kwong, J.C.

Surveillance for Common Arboviruses in Whole Blood of Malaria-Free Ill Returned Canadian Travelers to the Americas

Current Infectious Disease Reports

Kariyawasam, R. and Eshaghi, A. and Perusini, S. and Lau, R. and Patel, S.N. and Gubbay, J.B. and Boggild, A.K.

S-Gene Target Failure as a Marker of Variant B.1.1.7 among SARS-CoV-2 Isolates in the Greater Toronto Area, December 2020 to March 2021

JAMA - Journal of the American Medical Association

Brown, K.A. and Gubbay, J. and Hopkins, J. and Patel, S. and Buchan, S.A. and Daneman, N. and Goneau, L.W.

Validation of a Laboratory-Developed Triplex Molecular Assay for Simultaneous Detection of Gastrointestinal Adenovirus and Rotavirus in Stool Specimens

Pathogens

Rachel R. Higgins and Adriana Peci and Mark Cardona and Jonathan B. Gubbay

04 / 2020

Influenza vaccine does not increase the risk of coronavirus or other noninfluenza respiratory viruses: Retrospective analysis from Canada, 2010-2011 to 2016-2017

Clinical Infectious Diseases

Skowronski, D.M. and Zou, M. and Clarke, Q. and Chambers, C. and Dickinson, J.A. and Sabaiduc, S. and Olsha, R. and Gubbay, J.B. and Drews, S.J. and Charest, H. and Winter, A.-L. and Jassem, A. and Murti, M. and Krajden, M. and De Serres, G.

Diagnostic Sensitivity of Nasopharyngeal RT-PCR in a Long-Term Care Home Outbreak

Journal of the American Medical Directors Association

Kain, D. and McCreight, E. and Mazzulli, T. and Gubbay, J.B. and Rea, E. and Johnstone, J.

Diagnosing COVID-19: The Disease and Tools for Detection

ACS nano

Udugama, B. and Kadhiresan, P. and Kozlowski, H.N. and Malekjahani, A. and Osborne, M. and Li, V.Y.C. and Chen, H. and Mubareka, S. and Gubbay, J.B. and Chan, W.C.W.

Real-time PCR-based SARS-CoV-2 detection in Canadian laboratories

Journal of Clinical Virology

LeBlanc, J.J. and Gubbay, J.B. and Li, Y. and Needle, R. and Arneson, S.R. and Marcino, D. and Charest, H. and Desnoyers, G. and Dust, K. and Fattouh, R. and Garceau, R. and German, G. and Hatchette, T.F. and Kozak, R.A. and Krajden, M. and Kuschak, T. and Lang, A.L.S. and Levett, P. and Mazzulli, T. and McDonald, R. and Mubareka, S. and Prystajecky, N. and Rutherford, C. and Smieja, M. and Yu, Y. and Zahariadis, G. and Zelyas, N. and Bastien, N.

Paediatric critical illness associated with respiratory infection: A single-centre, retrospective cohort study

BMJ Paediatrics Open

Alfaraidi, H. and Luinstra, K. and Eshaghi, A. and Smieja, M. and Gubbay, J.B. and Pernica, J.M.

Interim estimates of 2019/20 vaccine effectiveness during early-season co-circulation of influenza A and B viruses, Canada, February 2020

Eurosurveillance

Skowronski, D.M. and Zou, M. and Sabaiduc, S. and Murti, M. and Olsha, R. and Dickinson, J.A. and Gubbay, J.B. and Croxen, M.A. and Charest, H. and Jassem, A. and Krajden, M. and Bastien, N. and Li, Y. and Serres, G.D.

The impact of repeated vaccination using 10-year vaccination history on protection against influenza in older adults: A test-negative design study across the 2010/11 to 2015/16 influenza seasons in Ontario, Canada

Eurosurveillance

Kwong, J.C. and Chung, H. and Jung, J.H. and Buchan, S.A. and Campigotto, A. and Campitelli, M.A. and Crowcroft, N.S. and Gubbay, J.B. and Karnauchow, T. and Katz, K. and McGeer, A.J. and McNally, J.D. and Richardson, D.C. and Richardson, S.E. and Rosella, L.C. and Schwartz, K.L. and Simor, A. and Smieja, M. and Zahariadis, G.

Diagnosis and Management of First Case of COVID-19 in Canada: Lessons Applied from SARS-CoV-1

Clinical Infectious Diseases

Marchand-Sencal, X. and Kozak, R. and Mubareka, S. and Salt, N. and Gubbay, J.B. and Eshaghi, A. and Allen, V. and Li, Y. and Bastien, N. and Gilmour, M. and Ozaldin, O. and Leis, J.A.

Evolutionary and structural analyses of SARS-CoV-2 D614G spike protein mutation now documented worldwide

bioRxiv

Isabel, S. and Graa-Miraglia, L. and Gutierrez, J.M. and Bundalovic-Torma, C. and Groves, H.E. and Isabel, M.R. and Eshaghi, A. and Patel, S.N. and Gubbay, J.B. and Poutanen, T. and Guttman, D.S. and Poutanen, S.M.

Presence of flavivirus antibodies does not lead to a greater number of symptoms in a small cohort of canadian travelers infected with zika virus

Viruses

Kozak, R.A. and Goneau, L.W. and DeLima, C. and Varsaneux, O. and Eshaghi, A. and Kristjanson, E. and Olsha, R. and Safronetz, D. and Perusini, S. and Frantz, C. and Gubbay, J.B.

Influenza Vaccine Effectiveness in Preventing Hospitalizations in Older Patients With Chronic Obstructive Pulmonary Disease

Journal of Infectious Diseases

Gershon, A.S. and Chung, H. and Porter, J. and Campitelli, M.A. and Buchan, S.A. and Schwartz, K.L. and Crowcroft, N.S. and Campigotto, A. and Gubbay, J.B. and Karnauchow, T. and Katz, K. and McGeer, A.J. and McNally, J.D. and Richardson, D.C. and Richardson, S.E. and Rosella, L.C. and Simor, A.E. and Smieja, M. and Zahariadis, G. and Kwong, J.C.

Haemophilus parainfluenza bacteremia post-ERCP and cholecystectomy in a pediatric patient: A case report

Journal of the Association of Medical Microbiology and Infectious Disease Canada

Jelena Popov and Arend Strikwerda and Jonathan Gubbay and Nikhil Pai

10 / 2019

Genetic characterization of human metapneumovirus identified through community and facility-based surveillance of infants in Dhaka, Bangladesh

Journal of Medical Virology

Rahman, M.Z. and Sumiya, M. and Sahabuddin, M. and Pell, L.G. and Gubbay, J.B. and Rahman, R. and Momtaz, F. and Azmuda, N. and Shanta, S.S. and Jahan, I. and Rahman, M. and Mahmud, A.A. and Roth, D.E. and Morris, S.K.

Children under 10 years of age were more affected by the 2018/19 influenza A(H1N1)pdm09 epidemic in Canada: Possible cohort effect following the 2009 influenza pandemic

Eurosurveillance

Skowronski, D.M. and Leir, S. and de Serres, G. and Murti, M. and Dickinson, J.A. and Winter, A.-L. and Olsha, R. and Croxen, M.A. and Drews, S.J. and Charest, H. and Martineau, C. and Sabaiduc, S. and Bastien, N. and Li, Y. and Petric, M. and Jassem, A. and Krajden, M. and Gubbay, J.B.

Vaccine Effectiveness against Lineage-matched and -mismatched Influenza B Viruses across 8 Seasons in Canada, 2010-2011 to 2017-2018

Clinical Infectious Diseases

Skowronski, D.M. and Chambers, C. and De Serres, G. and Sabaiduc, S. and Winter, A.-L. and Dickinson, J.A. and Gubbay, J.B. and Drews, S.J. and Fonseca, K. and Charest, H. and Martineau, C. and Hickman, R. and Chan, T. and Jassem, A. and Petric, M. and Rose, C. and Bastien, N. and Li, Y. and Krajden, M.

Equity and impact: Ontario's infant rotavirus immunization program five years following implementation. A population-based cohort study

Vaccine

Wilson, S.E. and Rosella, L.C. and Wang, J. and Renaud, A. and Le Saux, N. and Crowcroft, N.S. and Desai, S. and Harris, T. and Bolotin, S. and Gubbay, J. and Deeks, S.L.

Measles antibody levels in young infants

Pediatrics

Science, M. and Savage, R. and Severini, A. and McLachlan, E. and Hughes, S.L. and Arnold, C. and Richardson, S. and Crowcroft, N. and Deeks, S. and Halperin, S. and Brown, K. and Hatchette, T. and Gubbay, J. and Mazzulli, T. and Bolotin, S.

Interim estimates of 2018/19 vaccine effectiveness against influenza A(H1N1)pdm09, Canada, January 2019

Eurosurveillance

Skowronski, D.M. and Leir, S. and Sabaiduc, S. and Murti, M. and Dickinson, J.A. and Olsha, R. and Gubbay, J.B. and Croxen, M.A. and Charest, H. and Chan, T. and Bastien, N. and Li, Y. and Krajden, M. and De Serres, G.

Cost-effectiveness of measles control during elimination in Ontario, Canada, 2015

Eurosurveillance

Ramsay, L.C. and Crowcroft, N.S. and Thomas, S. and Aruffo, E. and Teslya, A. and Heffernan, J.M. and Gournis, E. and Hiebert, J. and Jaeger, V. and Jiaravuthisan, M. and Sharron, J. and Severini, A. and Deeks, S.L. and Gubbay, J. and Mazzulli, T. and Sander, B.

Influenza virus RNA recovered from droplets and droplet nuclei emitted by adults in an acute care setting

Journal of Occupational and Environmental Hygiene

Yip, L. and Finn, M. and Granados, A. and Prost, K. and McGeer, A. and Gubbay, J.B. and Scott, J. and Mubareka, S.

Evaluating the use of whole genome sequencing for the investigation of a large mumps outbreak in Ontario, Canada

Scientific Reports

Stapleton, P.J. and Eshaghi, A. and Seo, C.Y. and Wilson, S. and Harris, T. and Deeks, S.L. and Bolotin, S. and Goneau, L.W. and Gubbay, J.B. and Patel, S.N.

Effects of absolute humidity, relative humidity, temperature, and wind speed on influenza activity in Toronto, Ontario, Canada

Applied and Environmental Microbiology

Peci, A. and Winter, A.-L. and Li, Y. and Gnaneshan, S. and Liu, J. and Mubareka, S. and Gubbay, J.B.

Characteristics and Outcomes of Young Children Hospitalized with Laboratory-confirmed Influenza or Respiratory Syncytial Virus in Ontario, Canada, 2009-2014

Pediatric Infectious Disease Journal

Buchan, S.A. and Chung, H. and Karnauchow, T. and McNally, J.D. and Campitelli, M.A. and Gubbay, J.B. and Katz, K. and McGeer, A.J. and Richardson, D.C. and Richardson, S.E. and Simor, A. and Smieja, M. and Zahariadis, G. and Tran, D. and Crowcroft, N.S. and Rosella, L.C. and Kwong, J.C.

Can routinely collected laboratory and health administrative data be used to assess influenza vaccine effectiveness? Assessing the validity of the Flu and Other Respiratory Viruses Research (FOREVER) Cohort

Vaccine

Kwong, J.C. and Buchan, S.A. and Chung, H. and Campitelli, M.A. and Schwartz, K.L. and Crowcroft, N.S. and Jackson, M.L. and Karnauchow, T. and Katz, K. and McGeer, A.J. and McNally, J.D. and Richardson, D.C. and Richardson, S.E. and Rosella, L.C. and Simor, A. and Smieja, M. and Zahariadis, G. and Campigotto, A. and Gubbay, J.B.

The direct healthcare costs attributable to West Nile virus illness in Ontario, Canada: A population-based cohort study using laboratory and health administrative data

BMC Infectious Diseases

Shing, E. and Wang, J. and Nelder, M.P. and Parpia, C. and Gubbay, J.B. and Loeb, M. and Kristjanson, E. and Marchand-Austin, A. and Moore, S. and Russell, C. and Sider, D. and Sander, B.

Assessment of population immunity to measles in Ontario, Canada: a Canadian Immunization Research Network (CIRN) study

Human Vaccines and Immunotherapeutics

Bolotin, S. and Severini, A. and Hatchette, T. and McLachlan, E. and Savage, R. and Hughes, S.L. and Wang, J. and Deeks, S.L. and Wilson, S. and Brisson, M. and Halperin, S.A. and Gubbay, J. and Mazzulli, T. and Serhir, B. and Ward, B.J. and Crowcroft, N.

Influenza vaccine effectiveness among patients with cancer: A population-based study using health administrative and laboratory testing data from Ontario, Canada

Journal of Clinical Oncology

Blanchette, P.S. and Chung, H. and Pritchard, K.I. and Earle, C.C. and Campitelli, M.A. and Buchan, S.A. and Schwartz, K.L. and Crowcroft, N.S. and Gubbay, J.B. and Karnauchow, T. and Katz, K. and McGeer, A.J. and McNally, J.D. and Richardson, D.C. and Richardson, S.E. and Rosella, L.C. and Simor, A. and Smieja, M. and Zahariadis, G. and Campigotto, A. and Kwong, J.C.

Paradoxical clade- And age-specific vaccine effectiveness during the 2018/19 influenza A(H3N2) epidemic in Canada: Potential imprint-regulated effect of vaccine (I-REV)

Eurosurveillance

Skowronski, D.M. and Sabaiduc, S. and Leir, S. and Rose, C. and Zou, M. and Murti, M. and Dickinson, J.A. and Olsha, R. and Gubbay, J.B. and Croxen, M.A. and Charest, H. and Bastien, N. and Li, Y. and Jassem, A. and Krajden, M. and De Serres, G.

Enterovirus d68 in a community hospital: A test-negative case-control study

JAMMI

Schwartz, K.L. and Wormsbecker, A.E. and Xiong, J. and Banerji, A. and Booth, T.F. and Gubbay, J.B. and Johnstone, J.

Zika virus infection in a pregnant Canadian traveler with congenital fetal malformations noted by ultrasonography at 14-weeks gestation

Tropical Diseases, Travel Medicine and Vaccines

Schwartz, K.L. and Chan, T. and Rai, N. and Murphy, K.E. and Whittle, W. and Drebot, M.A. and Gubbay, J. and Boggild, A.K.

Canada-Wide Epidemic of emm74 Group A Streptococcus Invasive Disease

Open Forum Infectious Diseases

Teatero, S. and McGeer, A. and Tyrrell, G.J. and Hoang, L. and Smadi, H. and Domingo, M.-C. and Levett, P.N. and Finkelstein, M. and Dewar, K. and Plevneshi, A. and Athey, T.B.T. and Gubbay, J.B. and Mulvey, M.R. and Martin, I. and Demczuk, W. and Fittipaldi, N.

Limitations of administrative data to identify measles cases in Ontario, Canada: a cautionary tale

Canadian Journal of Public Health

Johnson, C. and Chen, C. and Rosella, L. and Rilkoff, H. and Marchand-Austin, A. and Gubbay, J.B. and Kozlowski, T. and Deeks, S.L. and Mazzulli, T. and Crowcroft, N.

Early season co-circulation of influenza a(H3N2) and b(yamagata): Interim estimates of 2017/18 vaccine effectiveness, Canada, january 2018

Eurosurveillance

Skowronski, D.M. and Chambers, C. and De Serres, G. and Dickinson, J.A. and Winter, A.-L. and Hickman, R. and Chan, T. and Jassem, A.N. and Drews, S.J. and Charest, H. and Gubbay, J.B. and Bastien, N. and Li, Y. and Krajden, M.

Laboratory testing and phylogenetic analysis during a mumps outbreak in Ontario, Canada

Virology Journal

L'Huillier, A.G. and Eshaghi, A. and Racey, C.S. and Ogbulafor, K. and Lombos, E. and Higgins, R.R. and Alexander, D.C. and Kristjanson, E. and Maregmen, J. and Gubbay, J.B. and Mazzulli, T.

Rotavirus genotypes circulating in Ontario, Canada, before and after implementation of the rotavirus immunization program

Vaccine

Isabel, S. and Higgins, R.R. and Peci, A. and Isabel, M.R. and Deeks, S.L. and Gubbay, J.B.

Molecular characterization of predominant Streptococcus pneumoniae serotypes causing invasive infections in Canada: The SAVE study, 2011-15

Journal of Antimicrobial Chemotherapy

Golden, A.R. and Adam, H.J. and Karlowsky, J.A. and Baxter, M. and Nichol, K.A. and Martin, I. and Demczuk, W. and Van Caeseele, P. and Gubbay, J.B. and Lefebvre, B. and Levett, P.N. and Zahariadis, G. and Haldane, D. and Gad, R. and German, G. and Gilmour, M.W. and Mulvey, M.R. and Hoban, D.J. and Zhanel, G.G.

Use of genome sequencing to define institutional influenza outbreaks, Toronto, Ontario, Canada, 2014-15

Emerging Infectious Diseases

MacFadden, D.R. and McGeer, A. and Athey, T. and Perusini, S. and Olsha, R. and Li, A. and Eshaghi, A. and Gubbay, J.B. and Hanage, W.P.

Targeting intracellular ion homeostasis for the control of respiratory syncytial virus

American Journal of Respiratory Cell and Molecular Biology

Norris, M.J. and Malhi, M. and Duan, W. and Ouyang, H. and Granados, A. and Cen, Y. and Tseng, Y.-C. and Gubbay, J. and Maynes, J. and Moraes, T.J.

Serotype distribution of invasive Streptococcus pneumoniae in adults 65years of age and over after the introduction of childhood 13-valent pneumococcal conjugate vaccination programs in Canada, 2010"2016

Vaccine

Demczuk, W.H.B. and Martin, I. and Desai, S. and Griffith, A. and Caron-Poulin, L. and Lefebvre, B. and McGeer, A. and Tyrrell, G.J. and Zhanel, G.G. and Gubbay, J. and Hoang, L. and Levett, P.N. and Van Caeseele, P. and Raafat Gad, R. and Haldane, D. and Zahariadis, G. and German, G. and Daley Bernier, J. and Strudwick, L. and Mulvey, M.R.

Acute myocardial infarction after laboratory-confirmed influenza infection

New England Journal of Medicine

Kwong, J.C. and Schwartz, K.L. and Campitelli, M.A. and Chung, H. and Crowcroft, N.S. and Karnauchow, T. and Katz, K. and Ko, D.T. and McGeer, A.J. and McNally, D. and Richardson, D.C. and Rosella, L.C. and Simor, A. and Smieja, M. and Zahariadis, G. and Gubbay, J.B.

Zoonotic Influenza and Human Health"Part 2: Clinical Features, Diagnosis, Treatment, and Prevention Strategies

Current Infectious Disease Reports

Mehta, K. and Goneau, L.W. and Wong, J. and L?Huillier, A.G. and Gubbay, J.B.

Zoonotic Influenza and Human Health"Part 1: Virology and Epidemiology of Zoonotic Influenzas

Current Infectious Disease Reports

Goneau, L.W. and Mehta, K. and Wong, J. and L?Huillier, A.G. and Gubbay, J.B.

Should sex be considered an effect modifier in the evaluation of influenza vaccine effectiveness?

Open Forum Infectious Diseases

Chambers, C. and Skowronski, D.M. and Rose, C. and De Serres, G. and Winter, A.-L. and Dickinson, J.A. and Jassem, A. and Gubbay, J.B. and Fonseca, K. and Drews, S.J. and Charest, H. and Martineau, C. and Petric, M. and Krajden, M.

Age-Related Differences in Influenza B Infection by Lineage in a Community-Based Sentinel System, 2010-2011 to 2015-2016, Canada

Journal of Infectious Diseases

Skowronski, D.M. and Chambers, C. and De Serres, G. and Sabaiduc, S. and Winter, A.-L. and Dickinson, J.A. and Gubbay, J.B. and Fonseca, K. and Drews, S.J. and Charest, H. and Martineau, C. and Krajden, M. and Petric, M. and Bastien, N. and Li, Y.

Seasonal Influenza Forecasting in Real Time Using the Incidence Decay With Exponential Adjustment Model

Open Forum Infectious Diseases

Nasserie, T. and Tuite, A.R. and Whitmore, L. and Hatchette, T. and Drews, S.J. and Peci, A. and Kwong, J.C. and Friedman, D. and Garber, G. and Gubbay, J. and Fisman, D.N.

Pre-and post-pandemic trends in antiviral use in hospitalized patients with laboratory-confirmed influenza: 2004/05"2013/14, Toronto, Canada

Antiviral Research

Coleman, B.L. and Hassan, K. and Green, K. and Gubbay, J.B. and Katz, K. and Mazzulli, T. and McNeil, S. and Muller, M. and Powis, J. and Richardson, D. and Simor, A. and McGeer, A.J.

Measuring influenza RNA quantity after prolonged storage or multiple freeze/thaw cycles

Journal of Virological Methods

Granados, A. and Petrich, A. and McGeer, A. and Gubbay, J.B.

The utility of measles and rubella IgM serology in an elimination setting, Ontario, Canada, 2009"2014

PLoS ONE

Bolotin, S. and Lim, G. and Dang, V. and Crowcroft, N. and Gubbay, J. and Mazzulli, T. and Schabas, R.

Global distribution and evolutionary history of enterovirus D68, with emphasis on the 2014 outbreak in Ontario, Canada

Frontiers in Microbiology

Eshaghi, A. and Duvvuri, V.R. and Isabel, S. and Banh, P. and Li, A. and Peci, A. and Patel, S.N. and Gubbay, J.B.

Vaccine effectiveness against laboratory-confirmed influenza hospitalizations among young children during the 2010-11 to 2013-14 influenza seasons in Ontario, Canada

PLoS ONE

Buchan, S.A. and Chung, H. and Campitelli, M.A. and Crowcroft, N.S. and Gubbay, J.B. and Karnauchow, T. and Katz, K. and McGeer, A.J. and McNally, J.D. and Richardson, D. and Richardson, S.E. and Rosella, L.C. and Simor, A. and Smieja, M. and Tran, D. and Zahariadis, G. and Kwong, J.C.

Serial vaccination and the antigenic distance hypothesis: Effects on influenza vaccine effectiveness during A(H3N2) epidemics in Canada, 2010-2011 to 2014-2015

Journal of Infectious Diseases

Skowronski, D.M. and Chambers, C. and De Serres, G. and Sabaiduc, S. and Winter, A.-L. and Dickinson, J.A. and Gubbay, J.B. and Fonseca, K. and Drews, S.J. and Charest, H. and Martineau, C. and Krajden, M. and Petric, M. and Bastien, N. and Li, Y. and Smith, D.J.

Influenza and rhinovirus viral load and disease severity in upper respiratory tract infections

Journal of Clinical Virology

Granados, A. and Peci, A. and McGeer, A. and Gubbay, J.B.

Detecting and quantifying influenza virus with self- versus investigator-collected mid-turbinate nasal swabs

Journal of Medical Virology

Granados, A. and Quach, S. and McGeer, A. and Gubbay, J.B. and Kwong, J.C.

Beyond Antigenic Match: Possible Agent-Host and Immuno-epidemiological Influences on Influenza Vaccine Effectiveness during the 2015-2016 Season in Canada

Journal of Infectious Diseases

Skowronski, D.M. and Chambers, C. and Sabaiduc, S. and De Serres, G. and Winter, A.-L. and Dickinson, J.A. and Gubbay, J.B. and Drews, S.J. and Martineau, C. and Charest, H. and Krajden, M. and Bastien, N. and Li, Y.

Measles outbreak with unique virus genotyping, Ontario, Canada, 2015

Emerging Infectious Diseases

Thomas, S. and Hiebert, J. and Gubbay, J.B. and Gournis, E. and Sharron, J. and Severini, A. and Jiaravuthisan, M. and Shane, A. and Jaeger, V. and Crowcroft, N.S. and Fediurek, J. and Sander, B. and Mazzulli, T. and Schulz, H. and Deeks, S.L.

Interim estimates of 2016/17 vaccine effectiveness against influenza A(H3N2), Canada, January 2017

Eurosurveillance

Skowronski, D.M. and Chambers, C. and Sabaiduc, S. and Dickinson, J.A. and Winter, A. and De Serres, G. and Drews, S.J. and Jassem, A. and Gubbay, J.B. and Charest, H. and Balshaw, R. and Bastien, N. and Li, Y. and Krajden, M.

Evaluation of euroimmun anti-zika virus igm and igg enzyme-linked immunosorbent assays for zika virus serologic testing

Journal of Clinical Microbiology

L'Huillier, A.G. and Hamid-Allie, A. and Kristjanson, E. and Papageorgiou, L. and Hung, S. and Wong, C.F. and Stein, D.R. and Olsha, R. and Goneau, L.W. and Dimitrova, K. and Drebot, M. and Safronetz, D. and Gubbay, J.B.

Challenges in interpretation of diagnostic test results in a mumps outbreak in a highly vaccinated population

Clinical and Vaccine Immunology

Trotz-Williams, L.A. and Mercer, N.J. and Paphitis, K. and Walters, J.M. and Wallace, D. and Kristjanson, E. and Gubbay, J. and Mazzulli, T.

Phylogenetic analysis of emergent Streptococcus pneumoniae serotype 22F causing invasive pneumococcal disease using whole genome sequencing

PLoS ONE

Demczuk, W.H.B. and Martin, I. and Hoang, L. and Van Caeseele, P. and Lefebvre, B. and Horsman, G. and Haldane, D. and Gubbay, J. and Ratnam, S. and German, G. and Bernier, J.D. and Strudwick, L. and McGeer, A. and Zhanel, G.G. and Van Domselaar, G. and Graham, M. and Mulvey, M.R.

Lineage-specific epitope profiles for HPAI H5 pre-pandemic vaccine selection and evaluation

Influenza and other Respiratory Viruses

Qiu, X. and Duvvuri, V.R. and Gubbay, J.B. and Webby, R.J. and Kayali, G. and Bahl, J.

Evaluation of altona diagnostics RealStar zika virus reverse transcription-PCR test kit for Zika virus PCR testing

Journal of Clinical Microbiology

L'Huillier, A.G. and Lombos, E. and Tang, E. and Perusini, S. and Eshaghi, A. and Nagra, S. and Frantz, C. and Olsha, R. and Kristjanson, E. and Dimitrova, K. and Safronetz, D. and Drebot, M. and Gubbay, J.B.

Evaluation and Comparison of Multiple Test Methods, Including Real-time PCR, for Legionella Detection in Clinical Specimens

Frontiers in Public Health

Peci, A. and Winter, A.-L. and Gubbay, J.B.

Whole-genome sequencing for surveillance of invasive pneumococcal diseases in Ontario, Canada: Rapid prediction of genotype, antibiotic resistance and characterization of emerging serotype 22F

Frontiers in Microbiology

Deng, X. and Memari, N. and Teatero, S. and Athey, T. and Isabel, M. and Mazzulli, T. and Fittipaldi, N. and Gubbay, J.B.

Spectrum of viral pathogens in blood of malaria-free Ill travelers returning to Canada

Emerging Infectious Diseases

Kariyawasam, R. and Lau, R. and Eshaghi, A. and Patel, S.N. and Sider, D. and Gubbay, J.B. and Boggild, A.K.

Interim estimates of 2015/16 vaccine effectiveness against influenza a(H1N1)pdm09, Canada, February 2016

Eurosurveillance

Chambers, C. and Skowronski, D.M. and Sabaiduc, S. and Winter, A.L. and Dickinson, J.A. and De Serres, G. and Gubbay, J.B. and Drews, S.J. and Martineau, C. and Eshaghi, A. and Krajden, M. and Bastien, N. and Li, Y.

High incidence of invasive group a streptococcus disease caused by strains of uncommon emm types in Thunder Bay, Ontario, Canada

Journal of Clinical Microbiology

Athey, T.B.T. and Teatero, S. and Sieswerda, L.E. and Gubbay, J.B. and Marchand-Austin, A. and Li, A. and Wasserscheid, J. and Dewar, K. and McGeer, A. and Williams, D. and Fittipaldi, N.

Population structure and drug resistance patterns of emerging non-PCV-13 Streptococcus pneumoniae serotypes 22F, 15A, and 8 isolated from adults in Ontario, Canada

Infection, Genetics and Evolution

Duvvuri, V.R. and Deng, X. and Teatero, S. and Memari, N. and Athey, T. and Fittipaldi, N. and Gubbay, J.B.

Much left to learn about Zika

The Canadian nurse

Gubbay, J.

A perfect storm: Impact of genomic variation and serial vaccination on low influenza vaccine effectiveness during the 2014-2015 season

Clinical Infectious Diseases

Skowronski, D.M. and Chambers, C. and Sabaiduc, S. and De Serres, G. and Winter, A.-L. and Dickinson, J.A. and Krajden, M. and Gubbay, J.B. and Drews, S.J. and Martineau, C. and Eshaghi, A. and Kwindt, T.L. and Bastien, N. and Li, Y.

Mutations acquired during cell culture isolation may affect antigenic characterisation of influenza A(H3N2) clade 3C.2a viruses

Eurosurveillance

Skowronski, D.M. and Sabaiduc, S. and Chambers, C. and Eshaghi, A. and Gubbay, J.B. and Krajden, M. and Drews, S.J. and Martineau, C. and De Serres, G. and Dickinson, J.A. and Winter, A. and Bastien, N. and Li, Y.

Epidemiology of Zika virus, 1947-2007

BMJ Global Health

Posen, H.J. and Keystone, J.S. and Gubbay, J.B. and Morris, S.K.

Association of serotype with respiratory presentations of pneumococcal infection, Ontario, Canada, 2003-2011

Vaccine

Shigayeva, A. and Rudnick, W. and Green, K. and Tyrrell, G. and Demczuk, W.H.B. and Gold, W.L. and Gubbay, J. and Jamieson, F. and Plevneshi, A. and Pong-Porter, S. and Richardson, S. and McGeer, A. and Almorhi, H. and Armstrong, I. and Yaffe, B. and Baqi, M. and Richardson, D. and Belhaj, A. and Kitai, I. and Bitnun, A. and Matlow, A.G. and Tran, D. and Chen, D.K. and Deeks, S. and Devlin, R. and Matukas, L. and Muller, M. and de Villa, E. and Dooling, K. and Dick, H. and Downey, J. and Powis, J.E. and Farshait, N. and Lee, K.S. and Kapala, J. and Rebbapragada, A. and Katz, K. and Johnstone, J. and Krajden, S. and Loeb, M. and Smaill, F. and Yamamura, D. and Lovgren, M. and Lovinsky, R. and Rose, D. and Ma, C. and Willey, B. and Wong, K. and Martin, I. and O'Grady, S. and Opavsky, A. and Ostrowska, K. and Sarabia, A. and Rau, N. and Rodgers, J. and Ricciuto, D. and Silverman, M. and Sales, V. and Shokry, P. and Simor, A. and Vearncombe, M. and Walmsley, S. and Wilson, A.

Maternal vitamin D supplementation during pregnancy and lactation to prevent acute respiratory infections in infancy in Dhaka, Bangladesh (MDARI trial): Protocol for a prospective cohort study nested within a randomized controlled trial

BMC Pregnancy and Childbirth

Morris, S.K. and Pell, L.G. and Rahman, M.Z. and Dimitris, M.C. and Mahmud, A. and Islam, M.M. and Ahmed, T. and Pullenayegum, E. and Kashem, T. and Shanta, S.S. and Gubbay, J. and Papp, E. and Science, M. and Zlotkin, S. and Roth, D.E.

Epidemiology of enterovirus D68 in Ontario

PLoS ONE

Peci, A. and Winter, A.-L. and Warshawsky, B. and Booth, T.F. and Eshaghi, A. and Li, A. and Perusini, S. and Olsha, R. and Marchand-Austin, A. and Kristjanson, E. and Gubbay, J.B.

Interim estimates of 2014/15 vaccine effectiveness against influenza A(H3N2) from Canadas sentinel physician surveillance network, January 2015

Eurosurveillance

Skowronski, D.M. and Chambers, C. and Sabaiduc, S. and De Serres, G. and Dickinson, J.A. and Winter, A.L. and Drews, S.J. and Fonseca, K. and Charest, H. and Gubbay, J.B. and Petric, M. and Krajden, M. and Kwindt, T.L. and Martineau, C. and Eshaghi, A. and Bastien, N. and Li, Y.

Genetic Analysis of Invasive Pneumococcal Isolates from Children in Ontario, Canada, 2007-2012

Pediatric Infectious Disease Journal

Deng, X. and Arya, G. and Memari, N. and MacKenzie, R. and Macmullin, G. and Low, D.E. and Pillai, D.R. and Gubbay, J.B.

Detection of enterovirus D68 in Canadian laboratories

Journal of Clinical Microbiology

Hatchette, T.F. and Drews, S.J. and Grudeski, E. and Booth, T. and Martineau, C. and Dust, K. and Garceau, R. and Gubbay, J. and Karnauchow, T. and Krajden, M. and Levett, P.N. and Mazzulli, T. and McDonald, R.R. and McNab, A. and Mubarek, S. and Needle, R. and Petrich, A. and Richardson, S. and Rutherford, C. and Smieja, M. and Tellier, R. and Tipples, G. and LeBlanc, J.J.

Acute respiratory infections in travelers returning from MERS-CoV"Affected areas

Emerging Infectious Diseases

German, M. and Olsha, R. and Kristjanson, E. and Marchand-Austin, A. and Peci, A. and Winter, A.-L. and Gubbay, J.B.

Strengths and limitations of assessing influenza vaccine effectiveness using routinely collected, passive surveillance data in Ontario, Canada, 2007 to 2012: Balancing efficiency versus quality

Eurosurveillance

Savage, R.D. and Winter, A.L. and Rosella, L.C. and Olsha, R. and Gubbay, J.B. and Skowronski, D.M. and Crowcroft, N.S.

Randomized evaluation of live attenuated vs. inactivated influenza vaccines in schools (RELATIVES) cluster randomized trial: Pilot results from a household surveillance study to assess direct and indirect protection from influenza vaccination

Vaccine

Kwong, J.C. and Pereira, J.A. and Quach, S. and Pellizzari, R. and Dusome, E. and Russell, M.L. and Hamid, J.S. and Feinberg, Y. and Winter, A.-L. and Gubbay, J.B. and Sirtonski, B. and Moher, D. and Sider, D. and Finkelstein, M. and Loeb, M.

Influenza virus emitted by naturally-infected hosts in a healthcare setting

Journal of Clinical Virology

Mubareka, S. and Granados, A. and Naik, U. and Darwish, I. and Cutts, T.A. and Astrakianakis, G. and Gubbay, J.B. and Peci, A. and Scott, J.A.

Randomized evaluation of live attenuated vs. inactivated influenza vaccines in schools (RELATIVES) pilot study: A cluster randomized trial

Vaccine

Kwong, J.C. and Pereira, J.A. and Quach, S. and Pellizzari, R. and Dusome, E. and Russell, M.L. and Hamid, J.S. and Feinberg, Y. and Winter, A.-L. and Gubbay, J.B. and Sirtonski, B. and Moher, D. and Sider, D. and Finkelstein, M. and Loeb, M. and Bettinger, J. and Buckeridge, D. and Hamid, J. and Crowcroft, N. and Deeks, S. and Guay, M. and McGeer, A. and Pereira, J. and Quach, S. and Quan, S.

Integrated sentinel surveillance linking genetic, antigenic, andepidemiologic monitoring of influenza vaccine-virus relatedness and effectiveness during the 2013-2014 influenza season

Journal of Infectious Diseases

Skowronski, D.M. and Chambers, C. and Sabaiduc, S. and De Serres, G. and Winter, A.-L. and Dickinson, J.A. and Gubbay, J. and Fonseca, K. and Charest, H. and Krajden, M. and Petric, M. and Mahmud, S.M. and Van Caeseele, P. and Bastien, N. and Eshaghi, A. and Li, Y.

Genetic diversity and evolutionary insights of respiratory syncytial virus A ON1 genotype: Global and local transmission dynamics

Scientific Reports

Duvvuri, V.R. and Granados, A. and Rosenfeld, P. and Bahl, J. and Eshaghi, A. and Gubbay, J.B.

Human metapneumovirus prevalence and molecular epidemiology in respiratory outbreaks in Ontario, Canada

Journal of Medical Virology

Neemuchwala, A. and Duvvuri, V.R. and Marchand-Austin, A. and Li, A. and Gubbay, J.B.

Interim estimates of 2013/14 vaccine effectiveness against influenza A(H1N1)PDM09 from Canada's sentinel surveillance network, January 2014

Eurosurveillance

Skowronski, D.M. and Chambers, C. and Sabaiduc, S. and De Serres, G. and Dickinson, J.A. and Winter, A.L. and Fonseca, K. and Gubbay, J.B. and Charest, H. and Petric, M. and Krajden, M. and Mahmud, S.M. and Van Caeseele, P. and Kwindt, T.L. and Eshaghi, A. and Bastien, N. and Li, Y.

Multiple influenza a (H3N2) mutations conferring resistance to neuraminidase inhibitors in a bone marrow transplant recipient

Antimicrobial Agents and Chemotherapy

Eshaghi, A. and Shalhoub, S. and Rosenfeld, P. and Li, A. and Higgins, R.R. and Stogios, P.J. and Savchenko, A. and Bastien, N. and Li, Y. and Rotstein, C. and Gubbaya, J.B.

Genetic characterization of seasonal influenza A (H3N2) viruses in Ontario during 2010-2011 influenza season: High prevalence of mutations at antigenic sites

Influenza and other Respiratory Viruses

Eshaghi, A. and Duvvuri, V.R. and Li, A. and Patel, S.N. and Bastien, N. and Li, Y. and Low, D.E. and Gubbay, J.B.

Previous antibiotic exposure and antimicrobial resistance in invasive pneumococcal disease: Results from prospective surveillance

Clinical Infectious Diseases

Kuster, S.P. and Rudnick, W. and Shigayeva, A. and Green, K. and Baqi, M. and Gold, W.L. and Lovinsky, R. and Muller, M.P. and Powis, J.E. and Rau, N. and Simor, A.E. and Walmsley, S.L. and Low, D.E. and McGeer, A. and Allard, S. and Armstrong, I. and Yaffe, B. and Richardson, D. and Chen, D.K. and Deeks, S. and Gubbay, J. and Jamieson, F. and Devlin, H.R. and De Villa, E. and Dooling, K. and Dick, H. and Downey, J. and Kapala, J. and Katz, K. and Kitai, I. and Johnstone, J. and Krajden, S.F. and Lee, K.S. and Loeb, M. and Smaill, F. and Lovgren, M. and Rose, D. and Ma, C. and Plevneshi, A. and Willey, B. and Pong-Porter, S. and Wong, K. and Martin, I. and Matlow, A.G. and Richardson, S. and Tran, D. and O Grady, S. and Ostrowska, K. and Sarabia, A. and Rodgers, J. and Sales, V. and Shokry, P. and Silverman, M. and Vearncombe, M. and Yama-Mura, D.

Preexisting CD4+ T-cell immunity in human population to avian influenza H7N9 virus: Whole proteome-wide immunoinformatics analyses

PLoS ONE

Duvvuri, V.R. and Duvvuri, B. and Alice, C. and Wu, G.E. and Gubbay, J.B. and Wu, J.

Coxsackieviruses in Ontario, January 2005 to December 2011

International Journal of Infectious Diseases

Peci, A. and Winter, A.-L. and Eshaghi, A. and Marchand-Austin, A. and Olsha, R. and Lombardi, N. and Gubbay, J.B.

Influenza A/subtype and B/lineage effectiveness estimates for the 2011-2012 trivalent vaccine: Cross-season and cross-lineage protection with unchanged vaccine

Journal of Infectious Diseases

Skowronski, D.M. and Janjua, N.Z. and Sabaiduc, S. and De Serres, G. and Winter, A.-L. and Gubbay, J.B. and Dickinson, J.A. and Fonseca, K. and Charest, H. and Bastien, N. and Li, Y. and Kwindt, T.L. and Mahmud, S.M. and Van Caeseele, P. and Krajden, M. and Petric, M.

Low 2012-13 influenza vaccine effectiveness associated with mutation in the egg-adapted H3N2 vaccine strain not antigenic drift in circulating viruses

PLoS ONE

Skowronski, D.M. and Janjua, N.Z. and De Serres, G. and Sabaiduc, S. and Eshaghi, A. and Dickinson, J.A. and Fonseca, K. and Winter, A.-L. and Gubbay, J.B. and Krajden, M. and Petric, M. and Charest, H. and Bastien, N. and Kwindt, T.L. and Mahmud, S.M. and Van Caeseele, P. and Li, Y.

Performance of rapid influenza diagnostic testing in outbreak settings

Journal of Clinical Microbiology

Peci, A. and Winter, A.-L. and King, E.-C. and Blair, J. and Gubbay, J.B.

Optimal number of samples to test for institutional respiratory infection outbreaks in Ontario

Epidemiology and Infection

Peci, A. and Marchand-Austin, A. and Winter, A.-J. and Gubbay, J.B.

Variant influenza A (H1N1) virus infection in Canada

Journal of Clinical Virology

Winter, A.L. and Eshaghi, A. and Farrell, D.J. and King, A. and Li, A. and Li, Y. and Gubbay, J.B.

T cell memory to evolutionarily conserved and shared hemagglutinin epitopes of H1N1 viruses: A pilot scale study

BMC Infectious Diseases

Duvvuri, V.R. and Duvvuri, B. and Jamnik, V. and Gubbay, J.B. and Wu, J. and Wu, G.E.

Risk factors for influenza among health care workers during 2009 pandemic, Toronto, Ontario, Canada

Emerging Infectious Diseases

Kuster, S.P. and Coleman, B.L. and Raboud, J. and McNeil, S. and De Serres, G. and Gubbay, J. and Hatchette, T. and Katz, K.C. and Loeb, M. and Low, D. and Mazzulli, T. and Simor, A. and McGeer, A.J.

Low seroconversion after one dose of AS03-adjuvanted H1N1 pandemic influenza vaccine in solid-organ transplant recipients

Canadian Journal of Infectious Diseases and Medical Microbiology

Resende, M.R. and Husain, S. and Gubbay, J. and Singer, L. and Cole, E. and Renner, E.L. and Rotstein, C.

Macrolide-resistant mycoplasma pneumoniae in humans, Ontario, Canada, 2010-2011

Emerging Infectious Diseases

Eshaghi, A. and Memari, N. and Tang, P. and Olsha, R. and Farrell, D.J. and Low, D.E. and Gubbay, J.B. and Patel, S.N.

Evaluation of 2009 pandemic H1N1 influenza vaccination in adults with lymphoid malignancies receiving chemotherapy or following autologous stem cell transplant

Leukemia and Lymphoma

Villa, D. and Gubbay, J. and Robert Sutherland, D. and Laister, R. and McGeer, A. and Cooper, C. and Fortuno III, E.S. and Xu, W. and Shi, L. and Kukreti, V. and Crump, M. and Kuruvilla, J.

Vaccine effectiveness against laboratory-confirmed influenza hospitalizations among elderly adults during the 2010-2011 season

Clinical Infectious Diseases

Kwong, J.C. and Campitelli, M.A. and Gubbay, J.B. and Peci, A. and Winter, A.-L. and Olsha, R. and Turner, R. and Rosella, L.C. and Crowcroft, N.S.

Local public health response to vaccine-associated measles: Case report

BMC Public Health

Hau, M. and Schwartz, K.L. and Frenette, C. and Mogck, I. and Gubbay, J.B. and Severini, A. and Hiebert, J. and Deeks, S.L. and Morris, S.K.

Pneumococcal vaccination programs and the burden of invasive pneumococcal disease in Ontario, Canada, 1995-2011

Vaccine

Rudnick, W. and Liu, Z. and Shigayeva, A. and Low, D.E. and Green, K. and Plevneshi, A. and Devlin, R. and Downey, J. and Katz, K. and Kitai, I. and Krajden, S. and Ostrowska, K. and Richardson, D. and Richardson, S. and Sarabia, A. and Silverman, M. and Simor, A.E. and Tyrrell, G. and McGeer, A. and Allard, S. and Armstrong, I. and Yaffe, B. and Baqi, M. and Chen, D.K. and Deeks, S. and Gubbay, J. and Jamieson, F. and Demczuk and Martin, I. and de Villa, E. and Dooling, K. and Gold, W. and Walmsley, S. and Kapala, J. and Johnstone, J. and Lee, K.S. and Loeb, M. and Smaill, F. and Lovgren, M. and Lovinsky, R. and Rose, D. and Ma, C. and Pong-Porter, S. and Willey, B. and Wong, K. and Matlow, A.G. and Tran, D. and Mederski, B. and Muller, M. and O'Grady, S. and Powis, J.E. and Rodger, J. and Rau, N. and Sales, V. and Shokry, P. and Vearncombe, M. and Yamamura, D.

Laboratory-confirmed influenza B infection in immunized long-term care facility residents receiving oseltamivir prophylaxis in Ontario

Infection Control and Hospital Epidemiology

Winter, A.-L. and Peci, A. and Eshaghi, A. and Baird, M. and Memari, N. and Kristjanson, E. and Balogun, E. and Higgins, R.R. and Li, A. and Farrell, D.J. and Gubbay, J.B.

Temporal changes in respiratory adenovirus serotypes circulating in the greater Toronto area, Ontario, during December 2008 to April 2010

Virology Journal

Abbas, K.Z. and Lombos, E. and Duvvuri, V.R. and Olsha, R. and Higgins, R.R. and Gubbay, J.B.

Interim estimates of influenza vaccine effectiveness in 2012/13 from Canada's sentinel surveillance network, January 2013

Eurosurveillance

Skowronski, D.M. and Janjua, N.Z. and De Serres, G. and Dickinson, J.A. and Winter, A.-L. and Mahmud, S.M. and Sabaiduc, S. and Gubbay, J.B. and Charest, H. and Petric, M. and Fonseca, K. and Van Caeseele, P. and Kwindt, T.L. and Krajden, M. and Eshaghi, A. and Li, Y.

Have changing pneumococcal vaccination programmes impacted disease in Ontario?

Vaccine

Lim, G.H. and Wormsbecker, A.E. and McGeer, A. and Pillai, D.R. and Gubbay, J.B. and Rudnick, W. and Low, D.E. and Green, K. and Crowcroft, N.S. and Deeks, S.L.

Expression of recombinant HA1 protein for specific detection of influenza A/H1N1/2009 antibodies in human serum

Microbiology and Immunology

Luo, L. and Nishi, K. and MacLeod, E. and Sabara, M.I. and Coleman, B.L. and Gubbay, J.B. and Li, Y.

Community-acquired respiratory viruses and co-infection among patients of Ontario sentinel practices, April 2009 to February 2010

Influenza and other Respiratory Viruses

Peci, A. and Winter, A..-L. and Gubbay, J.B. and Skowronski, D.M. and Balogun, E.I. and De Lima, C. and Crowcroft, N.S. and Rebbapragada, A.

A sentinel platform to evaluate influenza vaccine effectiveness and new variant circulation, Canada 2010-2011 season

Clinical Infectious Diseases

Skowronski, D.M. and Janjua, N.Z. and De Serres, G. and Winter, A.-L. and Dickinson, J.A. and Gardy, J.L. and Gubbay, J. and Fonseca, K. and Charest, H. and Crowcroft, N.S. and Fradet, M.D. and Bastien, N. and Li, Y. and Krajden, M. and Sabaiduc, S. and Petric, M.

Serotype distribution of invasive Streptococcus pneumoniae in Canada during the introduction of the 13-valent pneumococcal conjugate vaccine, 2010

Canadian Journal of Microbiology

Demczuk, W.H.B. and Martin, I. and Griffith, A. and Lefebvre, B. and McGeer, A. and Shane, A. and Zhanel, G.G. and Tyrrell, G.J. and Gilmour, M.W. and Hoang, L. and Pocock, I. and Paccagnella, A. and Janz, L. and Mithan, S. and Rahim, T. and Horsman, G. and Nagle, E. and Kitzul, R. and Bullard, J. and Van Caeseele, P. and Sitter, D. and Pillai, D. and Gubbay, J. and Rawte, P. and Couillard, M. and Haldane, D. and Doroshenko, A. and Thibeault, M. and Brisson, E. and Plourde, F. and Thibault, L. and Abbott, L. and Stace, M. and Delaney, P. and Turgeon, L. and Mahaney, T. and Ang, L. and Sellers, R. and Robberts, L. and March, S. and Case, C. and Robertson, R. and Nash, B. and Cash, C. and Plevneshi, A. and Pong-Porter, S. and Green, K. and Wong, K.

Genetic variability of human respiratory syncytial virus a strains circulating in Ontario: A novel genotype with a 72 nucleotide G gene duplication

PLoS ONE

Eshaghi, A. and Duvvuri, V.R. and Lai, R. and Nadarajah, J.T. and Li, A. and Patel, S.N. and Low, D.E. and Gubbay, J.B.

Potential T cell epitopes within swine-origin triple reassortant influenza A (H3N2) variant virus which emerged in 2011: An immunoinformatics study

Vaccine

Duvvuri, V.R. and Marchand-Austin, A. and Eshaghi, A. and Patel, S.N. and Low, D.E. and Gubbay, J.B.

The role of torovirus in nosocomial viral gastroenteritis at a large tertiary pediatric centre

Canadian Journal of Infectious Diseases and Medical Microbiology

Gubbay, J.B. and Al-Rezqi, A. and Hawkes, M. and Williams, L. and Richardson, S.E. and Matlow, A.

Respiratory viral infections in institutions from late stage of the first and second waves of pandemic influenza A (H1N1) 2009, Ontario, Canada

Influenza and other Respiratory Viruses

Asner, S. and Peci, A. and Marchand-Austin, A. and Winter, A.-L. and Olsha, R. and Kristjanson, E. and Low, D.E. and Gubbay, J.B.

Recovery of influenza B virus with the H273Y point mutation in the neuraminidase active site from a human patient

Journal of Clinical Microbiology

Higgins, R.R. and Beniprashad, M. and Chong-King, E. and Li, Y. and Bastien, N. and Low, D.E. and Gubbay, J.B.

Poor seroprotection but allosensitization after adjuvanted pandemic influenza H1N1 vaccine in kidney transplant recipients

Transplant Infectious Disease

Fairhead, T. and Hendren, E. and Tinckam, K. and Rose, C. and Sherlock, C.H. and Shi, L. and Crowcroft, N.S. and Gubbay, J.B. and Landsberg, D. and Knoll, G. and Gill, J. and Kumar, D.

Pandemic H1N1 influenza infection and vaccination in humans induces cross-protective antibodies that target the hemagglutinin stem

Frontiers in Immunology

Thomson, C.A. and Wang, Y. and Jackson, L.M. and Olson, M. and Wang, W. and Liavonchanka, A. and Keleta, L. and Silva, V. and Diederich, S. and Jones, R.B. and Gubbay, J. and Pasick, J. and Petric, M. and Jean, F. and Allen, V.G. and Brown, E.G. and Rini, J.M. and Schrader, J.W.

Immunogenicity of a half-dose of adjuvanted 2009 pandemic H1N1 influenza vaccine in adults: A prospective cohort study

European Journal of Clinical Microbiology and Infectious Diseases

Coleman, B.L. and Kuster, S.P. and Gubbay, J. and Scheifele, D. and Li, Y. and Low, D. and Crowcroft, N. and Mazzulli, T. and Shi, L. and Halperin, S.A. and Law, B. and McGeer, A.

Detection of an influenza B virus strain with reduced susceptibility to neuraminidase inhibitor drugs

Journal of Clinical Microbiology

Bastien, N. and Gubbay, J.B. and Richardson, D. and Sleeman, K. and Gubareva, L. and Li, Y.

Humoral and cell-mediated immunity to pandemic H1N1 influenza in a Canadian cohort one year post-pandemic: Implications for vaccination

PLoS ONE

Wagar, L.E. and Rosella, L. and Crowcroft, N. and Lowcock, B. and Drohomyrecky, P.C. and Foisy, J. and Gubbay, J. and Rebbapragada, A. and Winter, A.-L. and Achonu, C. and Ward, B.J. and Watts, T.H.

Analytical performance of norovirus real-time RT-PCR detection protocols in Canadian laboratories

Journal of Clinical Virology

Mattison, K. and Grudeski, E. and Auk, B. and Brassard, J. and Charest, H. and Dust, K. and Gubbay, J. and Hatchette, T.F. and Houde, A. and Jean, J. and Jones, T. and Lee, B.E. and Mamiya, H. and McDonald, R. and Mykytczuk, O. and Pang, X. and Petrich, A. and Plante, D. and Ritchie, G. and Wong, J. and Booth, T.F.

An assessment of mumps vaccine effectiveness by dose during an outbreak in Canada

CMAJ. Canadian Medical Association Journal

Deeks, S.L. and Lim, G.H. and Simpson, M.A. and Gagn, L. and Gubbay, J. and Kristjanson, E. and Fung, C. and Crowcroft, N.S.

Neuraminidase-inhibitor resistance testing for pandemic influenza A (H1N1) 2009 in Ontario, Canada

Journal of Clinical Virology

Longtin, J. and Patel, S. and Eshaghi, A. and Lombos, E. and Higgins, R. and Alexander, D. and Olsha, R. and Doyle, J. and Tran, D. and Sarabia, A. and Lee, C. and Bastien, N. and Li, Y. and Low, D. and Boivin, G. and Gubbay, J.

Multidrug-resistant pandemic (H1N1) 2009 infection in immunocompetent child

Emerging Infectious Diseases

Eshaghi, A. and Patel, S.N. and Sarabia, A. and Higgins, R.R. and Savchenko, A. and Stojios, P.J. and Li, Y. and Bastien, N. and Alexander, D.C. and Low, D.E. and Gubbay, J.B.

Early post-transplant vaccination with pandemic influenza A/H1N1 vaccine in pediatric heart transplant recipients

Pediatric Transplantation

Altamirano-Diaz, L. and West, L. and Humar, A. and Ely, L. and Urschel, S. and Gubbay, J. and Crowcroft, N. and Kumar, D.

Seroprevalence of pandemic influenza H1N1 in Ontario from January 2009-May 2010

PLoS ONE

Achonu, C. and Rosella, L. and Gubbay, J.B. and Deeks, S. and Rebbapragada, A. and Mazzulli, T. and Willison, D. and Foisy, J. and McGeer, A. and Johnson, I. and LaFreniere, M. and Johnson, C. and Willmore, J. and Yue, C. and Crowcroft, N.S.

Long term immune responses to pandemic influenza A/H1N1 infection in solid organ transplant recipients

PLoS ONE

Baluch, A. and Humar, A. and Egli, A. and Gubbay, J. and Lisboa, L. and Wilson, L. and Kumar, D.

Evaluation of pandemic H1N1 (2009) influenza vaccine in adults with solid tumor and hematological malignancies on active systemic treatment

Journal of Clinical Virology

Mackay, H.J. and McGee, J. and Villa, D. and Gubbay, J.B. and Tinker, L.M. and Shi, L. and Kuruvilla, J. and Wang, L. and MacAlpine, K. and Oza, A.M.

Evaluation and verification of the seeplex diarrhea-V ACE assay for simultaneous detection of adenovirus, rotavirus, and norovirus genogroups I and II in clinical stool specimens

Journal of Clinical Microbiology

Higgins, R.R. and Beniprashad, M. and Cardona, M. and Masney, S. and Low, D.E. and Gubbay, J.B.

When should a diagnosis of influenza be considered in adults requiring intensive care unit admission? Results of population-based active surveillance in Toronto

Critical Care

Kuster, S.P. and Katz, K.C. and Blair, J. and Downey, J. and Drews, S.J. and Finkelstein, S. and Fowler, R. and Green, K. and Gubbay, J. and Hassan, K. and Lapinsky, S.E. and Mazzulli, T. and McRitchie, D. and Pataki, J. and Plevneshi, A. and Powis, J. and Rose, D. and Sarabia, A. and Simone, C. and Simor, A. and McGeer, A.

Effectiveness of AS03 adjuvanted pandemic H1N1 vaccine: case-control evaluation based on sentinel surveillance system in Canada, autumn 2009.

BMJ (Clinical research ed.)

Skowronski, D.M. and Janjua, N.Z. and De Serres, G. and Hottes, T.S. and Dickinson, J.A. and Crowcroft, N. and Kwindt, T.L. and Tang, P. and Charest, H. and Fonseca, K. and Gubbay, J.B. and Bastien, N. and Li, Y. and Petric, M.

Severe human rhinovirus outbreak associated with fatalities in a long-term care facility in Ontario, Canada

Journal of the American Geriatrics Society

Longtin, J. and Winter, A.-L. and Heng, D. and Marchand-Austin, A. and Eshaghi, A. and Patel, S. and Jamieson, F. and Weir, E. and Low, D.E. and Gubbay, J.B.

Rhinovirus outbreaks in long-term care facilities, Ontario, Canada

Emerging Infectious Diseases

Longtin, J. and Marchand-Austin, A. and Winter, A.-L. and Patel, S. and Eshaghi, A. and Jamieson, F. and Low, D.E. and Gubbay, J.B.

High prevalence of asymptomatic bocavirus in daycare: Is otitis media a confounder?

Journal of Infectious Diseases

Longtin, J. and Gubbay, J.B. and Patel, S. and Low, D.E.

Transmission of influenza A pandemic (H1N1) 2009 virus in a long-term care facility in Ontario, Canada

Infection Control and Hospital Epidemiology

Alexander, D.C. and Winter, A.-L. and Eshaghi, A. and Dooling, K. and Frenette, C. and De Villa, E. and Varia, M. and Marchand-Austin, A. and Jamieson, F. and Gubbay, J.B.

Respiratory infection in institutions during early stages of pandemic (H1N1) 2009, Canada

Emerging Infectious Diseases

Marchand-Austin, A. and Farrell, D.J. and Jamieson, F.B. and Lombardi, N. and Lombos, E. and Narang, S. and Akwar, H. and Low, D.E. and Gubbay, J.B.

Older age and a reduced likelihood of 2009 H1N1 virus infection

New England Journal of Medicine

Fisman, D.N. and Savage, R. and Gubbay, J. and Achonu, C. and Akwar, H. and Farrell, D.J. and Crowcroft, N.S. and Jackson, P.

Multiplex PCR tests sentinel the appearance of pandemic influenza viruses including H1N1 swine influenza

Journal of Clinical Virology

Mahony, J.B. and Hatchette, T. and Ojkic, D. and Drews, S.J. and Gubbay, J. and Low, D.E. and Petric, M. and Tang, P. and Chong, S. and Luinstra, K. and Petrich, A. and Smieja, M.

Clinical features, epidemiology, antimicrobial resistance, and exotoxin genes (including that of Panton-Valentine leukocidin) of gentamicin-susceptible methicillin-resistant Staphylococcus aureus (GS-MRSA) isolated at a paediatric teaching hospital in New South Wales, Australia

Pathology

Gubbay, J.B. and Gosbell, I.B. and Barbagiannakos, T. and Vickery, A.M. and Mercer, J.L. and Watson, M.

Cellulitis in childhood invasive pneumococcal disease: A population-based study

Journal of Paediatrics and Child Health

Gubbay, J.B. and Mcintyre, P.B. and Gilmour, R.E.